PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016505251.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 406aa    MW: 46626.1 Da    PI: 8.7203
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016505251.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.51.3e-065476123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C+ sF r  nL+ H r+H
  XP_016505251.1 54 YVCEICNLSFQREQNLQMHRRRH 76
                    9*********************9 PP

2zf-C2H216.72e-05136158123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+k +  +s++k Hi+t+
  XP_016505251.1 136 WVCQKCSKGYAVQSDYKAHIKTC 158
                     58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.8E-65376No hitNo description
PfamPF139124.6E-65377IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.6995476IPR007087Zinc finger, C2H2
SMARTSM003559.9E-45476IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.608.8E-55498IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SMARTSM0035587100130IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-4127157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.8E-6131156No hitNo description
SMARTSM0035563136163IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MLASHSFLFP APSQSEPFSS PENGFIIKRK RRPADPDAQV VYLTAEMLME SDRYVCEICN  60
LSFQREQNLQ MHRRRHKVPW KLKKKEEEKN EMEQVKKRVY VCPEPSCVHH NPSHALGDLV  120
GIKKHFRRKH SNYKQWVCQK CSKGYAVQSD YKAHIKTCGT RGHSCDCGRV FSRVETFIEH  180
QDSCKAQSTT STTTKECDVQ KPKPAFLQPQ CFSNYSNSRM PKNTTDHPNL ELELFTSSNY  240
NQNTYYSSFL QNEHTPQLDL SFGSQSDNYY QVQHNEKAAA LIMEDTAIQV SKLKSEAKEI  300
LKIAMEEKAM AAEKRQEAKC LIELANLEMA KAREIRQQSL LAEYSTAQLL KDCAEMKIVG  360
SQSHVKIITC TSCNSKQFQT VSKEAAVCRE VFPALTNYLS SSIYRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754444e-80HG975444.1 Solanum pennellii chromosome ch05, complete genome.
GenBankHG9755174e-80HG975517.1 Solanum lycopersicum chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009616335.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2
RefseqXP_016505251.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2
SwissprotF4IPE31e-104IDD15_ARATH; Protein SHOOT GRAVITROPISM 5
TrEMBLK4C2821e-175K4C282_SOLLC; Uncharacterized protein
STRINGSolyc05g054030.2.11e-175(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.12e-88C2H2-like zinc finger protein